Calculate read duplication rate
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam:file
the alignment in bam format
*.{bam}
seq_xls
meta:file
Read duplication rate determined from mapping position of read
*seq.DupRate.xls
*seq.DupRate.xls:file
pos_xls
Read duplication rate determined from sequence of read
*pos.DupRate.xls
*pos.DupRate.xls:file
pdf
plot of duplication rate
*.pdf
*.pdf:file
rscript
script to reproduce the plot
*.R
*.r:file
versions
versions.yml:file
File containing software versions
versions.yml
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
